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        Package&nbsp;trunk ::
        Package&nbsp;BIP
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<!-- ==================== PACKAGE DESCRIPTION ==================== -->
<h1 class="epydoc">Package BIP</h1><p class="nomargin-top"><span class="codelink"><a href="trunk.BIP-pysrc.html">source&nbsp;code</a></span></p>
<p>Bayesian Inference Package containing usefull classes and functions
for doing inference in various applications.</p>
<p>This is not a &quot;Bayesian Statistics&quot; package, i.e., it was not conceived
to provide data analysis methods such as the one you can find
on a statistical package such as R (for example).</p>
<p>Here, you will find some the basic building blocks those
sophisticated Bayesian regression methods are built from, such as
likelihood functions, MCMC samplers, SMC samplers, etc..</p>
<p>This package exists because such basic tools are not readily accessible
in Task-oriented statistical software. From these tools, as this package matures,
you will be able to easily build a solution for your own inferential inquiries,
a solution which may not be available on standard statistical packages.</p>

<!-- ==================== SUBMODULES ==================== -->
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  <ul class="nomargin">
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a></strong>: <em class="summary">Basic Likelihood tools such as functions for computing likelihoods,
        Latin Hypercube sampling (efficient random sampling) and other 
        tools which don't belong on other packages, or apply to multiple 
        packages.</em>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a></strong>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a></strong>: <em class="summary">Module with specialized plotting functions for the Melding results</em>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.Samplers-module.html">trunk.BIP.Bayes.Samplers</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a></strong>: <em class="summary">Module implementing MCMC samplers</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.general-module.html">trunk.BIP.Bayes.general</a></strong>: <em class="summary">This package contain classes the deal with Bayesian inference based
        on numerical representation of a variable distribution.</em>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a></strong>: <em class="summary">This module implements classes to represent an arbitrary Bayesian random variable.</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.lhs-module.html">trunk.BIP.Bayes.lhs</a></strong>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a></strong>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.SDE-module.html">trunk.BIP.SDE</a></strong>: <em class="summary">Package with tools for the simulation of Stochastic differential 
        equations.</em>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a></strong>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a></strong>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.SMC-module.html">trunk.BIP.SMC</a></strong>: <em class="summary">Package with Sequential Monte Carlo routines.</em>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a></strong>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Viz-module.html">trunk.BIP.Viz</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="trunk.BIP.Viz.ascii-module.html">trunk.BIP.Viz.ascii</a></strong>: <em class="summary">This module contains code to generate ascii representations
of statistical objects</em>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Viz.asciihist-module.html">trunk.BIP.Viz.asciihist</a></strong>: <em class="summary">This module contains code to generate ascii representations
of statistical objects</em>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a></strong>    </li>
    </ul>
    </li>
    <li class="private"> <strong class="uidlink"><a href="trunk.BIP.__version__-module.html">trunk.BIP.__version__</a></strong>    </li>
    <li> <strong class="uidlink"><a href="trunk.BIP.logsetup-module.html">trunk.BIP.logsetup</a></strong>    </li>
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<!-- ==================== VARIABLES ==================== -->
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        <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger(&quot;BIP&quot;)">logging.getLogger(&quot;BIP&quot;)</code>
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        <a href="trunk.BIP-module.html#fh" class="summary-name">fh</a> = <code title="RotatingFileHandler(&quot;/tmp/BIP.log&quot;, maxBytes= 500000, backupCount= 2)">RotatingFileHandler(&quot;/tmp/BIP.log&quot;, maxBytes= 500000, bac<code class="variable-ellipsis">...</code></code>
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        <a name="ch"></a><span class="summary-name">ch</span> = <code title="logging.StreamHandler()">logging.StreamHandler()</code>
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        <a href="trunk.BIP-module.html#formatter" class="summary-name">formatter</a> = <code title="logging.Formatter(&quot;%(asctime)s - %(name)s - %(levelname)s - %(message)\
s&quot;)">logging.Formatter(&quot;%(asctime)s - %(name)s - %(leve<code class="variable-ellipsis">...</code></code>
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  <h3 class="epydoc">fh</h3>
  
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    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
RotatingFileHandler(&quot;/tmp/BIP.log&quot;, maxBytes= 500000, backupCount= 2)
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  <h3 class="epydoc">formatter</h3>
  
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  </dl>
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    <dt>Value:</dt>
      <dd><table><tr><td><pre class="variable">
logging.Formatter(&quot;%(asctime)s - %(name)s - %(levelname)s - %(message)<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
s&quot;)
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